Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015917269.1_cds_XP_016466881.1_59692
CDS Infomation

[gene=LOC107789556] [db_xref=GeneID:107789556] [protein=endo-1,4-beta-xylanase-like] [protein_id=XP_016466881.1] [location=complement(join(100977..101336,101783..102562,103059..103157,103318..103481,103755..104004))] [gbkey=CDS]
Sequence

ATGTGTACATATATATGTTTCCAGTGTTTGGCAGATCCTCTCAGAGCTCAATACAATGGA
GGAATAGTCGTGAATCCAGACTTCAATGAAGGACTCCTTGGCTGGAGAAAATGTGGATTT
GCAAACATGGCCACAAGGATGTCCAACATTACTAATAACACTTACATTGTGGCTACCAAC
AGGAAAGGAGCCCTTCATGGTTTTACCCAAAAATATTTCTTGCAAAAGGATACTCACTAC
GTAACTTCAGCTTGGGTGCGAGTGAGCCAAGGGGACATTCACGTAGCTCTTGCATTAGGA
ACATCATTTGGCATGCAACGTAGTGGATGGGCAATTGCTCGTCCTGGTTGCTGGTCTATG
CTAAAAGGTGGTTTTATGCTCAATACTTCAGGTCCTGTCGACCTATATCTTGAAGCCAAC
AACACAGCTATTGAGTTGTGGGCAGATAGCATATCAATTAAGCCATTTTCTCTAGAGGAG
TGGAAATTTCATCAACATCAAAGCACTGAGAAGGTACGCAAAGCTAAAGTGAAAATCCAA
GCGGTGGATTCTCAAGGCCAACCTTTACCAAACGCAACGGTCTCCCTGGCACAACAGAAG
AACAATTTCCCGTTTGGAAATGCAATAAGTCAACACATCCTAAACAACAAAGCCTACCAA
GATTGGTTTACCTCAAGATTTAAATACACAGTTTTCGAAAACGAAATGAAATGGTACGCC
AACGAGAAAATCCCCGGCCAACTAGACTACAACGTAGCTGATGCTATGCTTAGTCTTGTC
CAAAAATATAACGTTAAAGTCCGCGGCCACAATGTCTTTTGGGATAATCCTCAGAACATG
CCTTCGTGGGCGCGTTATCTTTCACCAGCACAGTTATCCGCAGCTGCATCAAGAAGGATA
AATTCCGTAATGAATCGATACTTAGGCCAACTTATTCATTGGGATGTTGTGAATGAAAAT
GTCCACTTCTCGTTCTTAGAGCAAATGCTAGGGAAGAATGCGTCTGCTGTTTACTACAAA
AAGGCTAATGAAATTGATAGCAAGGCAATTCCATTCTTGAATGATTTCAATACAATTGAA
CATGGATTTGATGGAACTTCAAATCCAGCTAAGTACCTAGAAAAGATTAAAGAGCTTCGA
TCCCATGGTTACAATGGTCCTTTAGGAATTGGACTCCAGGGACATTTTGTCACTCCAAAT
TTGCCTTATATTAGATCTTCTCTTGATATCCTTGCTTCAACTGGATTGCCTATTTGGATC
ACAGAGCTGGATGTTGCAAACACCACCAACCAGGAGGTATATTTGGAGGAGATAATAAGG
GAGATACATGCACATCCAGGAGTGAAAGGGATAATGATGTGGGCACCATGGAATCCTAAA
GGATGTTACAGGATGTGTTTGACTGATAACAATTTCAAGAATTTGCCTACTGGAGATGTT
GTAGACAATATTATAAAGGAATGGAATCACCACGATTTTTCGGGGAATACTGATGAAAAT
GGTTTTTTTGAAGCTTCACTTTTTCATGGGGAATATCAATTTGAAATCAGTCATCCTGAT
CAAGTAAAATATGATACTTATGTGGCTCAGAAATTAGTTAAGGTGGCACCAACCGGGGAA
AGTTCACAATCACATTACACAGTCTTTGTTTGA

Peptide Sequence

PEP ID

XP_016466881.1
PEP Infomation

PREDICTED: endo-1,4-beta-xylanase-like [Nicotiana tabacum]
Sequence

MCTYICFQCLADPLRAQYNGGIVVNPDFNEGLLGWRKCGFANMATRMSNITNNTYIVATN
RKGALHGFTQKYFLQKDTHYVTSAWVRVSQGDIHVALALGTSFGMQRSGWAIARPGCWSM
LKGGFMLNTSGPVDLYLEANNTAIELWADSISIKPFSLEEWKFHQHQSTEKVRKAKVKIQ
AVDSQGQPLPNATVSLAQQKNNFPFGNAISQHILNNKAYQDWFTSRFKYTVFENEMKWYA
NEKIPGQLDYNVADAMLSLVQKYNVKVRGHNVFWDNPQNMPSWARYLSPAQLSAAASRRI
NSVMNRYLGQLIHWDVVNENVHFSFLEQMLGKNASAVYYKKANEIDSKAIPFLNDFNTIE
HGFDGTSNPAKYLEKIKELRSHGYNGPLGIGLQGHFVTPNLPYIRSSLDILASTGLPIWI
TELDVANTTNQEVYLEEIIREIHAHPGVKGIMMWAPWNPKGCYRMCLTDNNFKNLPTGDV
VDNIIKEWNHHDFSGNTDENGFFEASLFHGEYQFEISHPDQVKYDTYVAQKLVKVAPTGE
SSQSHYTVFV

Transcript Sequence

Gene sequence data has not been registered.